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| Registros recuperados : 35 | |
| 1. |  | SANTOS, M. E. C. DOS; MELO, R. R. DE; CORREIA, D.; SOUSA, J. A. de; SANTOS, A. M.; SILVA, A. K. V. DA; PAULA, E. A. DE O.; ALVES, A. R.; SCATOLINO, M. V.; RUSCH, F.; MASCARENHAS, A. R. P.; PIMENTA, A. S.; STANGERLIN, D. M. Variation in the Basic Density of Woods Produced in the Brazilian Semiarid Region Subjected to Different Irrigation Regimes. Forests, 14, 2168, 2023.| Biblioteca(s): Embrapa Agroindústria Tropical; Embrapa Florestas. |
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| 2. | | SILVA, J. E. da; MELO, D. M. de A.; MELO, M. A. de F.; AGUIAR, E. M. de; PIMENTA, A. S.; MEDEIROS, E. P. de; CALIXTO, G. Q.; BRAGA, R. M. Energetic characterization and evaluation of briquettes produced from naturally colored cotton waste. Environmental Science and Pollution Research, v. 26, 2019.| Biblioteca(s): Embrapa Algodão. |
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| 3. | | SANTOS, R. C. dos; CASTRO, R. V. O.; CARNEIRO, A. de C. O.; CASTRO, A. F. N. M.; PIMENTA, A. S.; PINTO, E. M.; MARINHO, I. V. Estoques de volume, biomassa e carbono na madeira de espécies da Caatinga em Caicó, RN. Pesquisa Florestal Brasileira, Colombo, v. 36, n. 85, p. 1-7, jan./mar. 2016.| Biblioteca(s): Embrapa Florestas. |
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| 4. | | ALMEIDA, A. M. C. de; OLIVEIRA, E. de; CALEGARI, L.; MEDEIROS NETO, P. N. de; PIMENTA, A. S. Avaliação físico-química e energética da madeira das espécies Piptadenia stipulacea (Benth.) Ducke E Amburana cearensis (Allemao) A. C. Smith de ocorrência no semiárido nordestino brasileiro. Ciência Florestal, Santa Maria, v. 25, n. 1, p. 165-173, 2015.| Biblioteca(s): Embrapa Florestas. |
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| 6. | | CARNEIRO, A de C. O.; SANTOS, R. C. dos; CASTRO, R. V. O.; CASTRO, A. F. N. M.; PIMENTA, A. S.; PINTO, E. M.; ALVES, I. C. N. Estudo da decomposição térmica da madeira de oito espécies da região do Seridó, Rio Grande do Norte. Revista Árvore, Viçosa, MG, v. 37, n. 6, p. 1153-1163, 2013.| Biblioteca(s): Embrapa Florestas. |
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| 7. | | SANTOS, R. C. dos; CARNEIRO, A. de C. O.; PIMENTA, A. S.; CASTRO, R. V. O.; MARINHO, I. V.; TRUGILHO, P. F.; ALVES, I. C. N.; CASTRO, A. F. N. M. Potencial energético da madeira de espécies oriundas de plano de manejo florestal no estado do Rio Grande Do Norte. Ciência Florestal, Santa Maria, RS, v. 23, n. 2, p. 491-502, abr./jun. 2013.| Biblioteca(s): Embrapa Florestas. |
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| 8. | | MEDEIROS NETO, P. N. de; OLIVEIRA, E. de; CALEGARI, L.; ALMEIDA, A. M. C. de; PIMENTA, A. S.; CARNEIRO, A. de C. O. Características físico-químicas e energéticas de duas espécies de ocorrência no semiárido brasileiro. Ciência Florestal, Santa Maria, RS, v. 22, n. 3, p. 579-588, jul./set. 2012.| Biblioteca(s): Embrapa Florestas. |
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| 9. | | SANTOS, R. C. dos; CARNEIRO, A. de C. O.; CASTRO, A. F. N. M.; CASTRO, R. V. O.; PIMENTA, A. S.; ARAÚJO, S. de O.; ATAÍDE, G. da M. Efeito inibidor da madeira de candeia em misturas com aglutinantes minerais. Scientia Forestalis, Piracicaba, v. 40, n. 93, p. 113-119, mar. 2012.| Biblioteca(s): Embrapa Florestas. |
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| 10. | | SANTOS, R. C. dos; CARNEIRO, A. de C. O.; CASTRO, R. V. O.; PIMENTA, A. S.; CASTRO, A. F. N. M.; MARINHO, I. V.; VILLAS BOAS, M. A. Potencial de briquetagem de resíduos florestais da região do Seridó, no Rio Grande do Norte. Pesquisa Florestal Brasileira, Colombo, v. 31, n. 68, p. 285-294, out./dez. 2011.| Biblioteca(s): Embrapa Florestas. |
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| 11. | | BENITES, V. de M.; TEIXEIRA, W. G.; REZENDA, M. E.; PIMENTA, A. S. Utilização de carvão e subprodutos da carbonização vegetal na agricultura: aprendendo com as terras pretas de índio. In: TEIXEIRA, W. G.; KERN, D. C.; MADARI, B. E.; LIMA, H. N.; WOODS, I. W. (Ed.). As terras pretas de índio da Amazônia: sua caracterização e uso deste conhecimento na criação de novas áreas. Manaus: EDUA/Embrapa Amazônia Ocidental, 2010. p. 286-297.| Biblioteca(s): Embrapa Amazônia Ocidental. |
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| 12. | | BENITES, V. de M.; TEIXEIRA, W. G.; REZENDE, M. E.; PIMENTA, A. S. Utilização de carvão e subprodutos da carbonização vegetal na agricultura: aprendendo com as Terras Pretas de Índio. In: TEIXEIRA, W. G.; KERN, D. C.; MADARI, B. E.; LIMA, H. N.; WOODS, W. (ed.). As terras pretas de índio da Amazônia: sua caracterização e uso deste conhecimento na criação de novas áreas. Manaus: Editora da Universidade Federal do Amazonas: Embrapa Amazônia Ocidental, 2010. p. 286-297.| Biblioteca(s): Embrapa Solos. |
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| 14. | | BENITES, V. de M.; TEIXEIRA, W. G.; REZENDE, M. E.; PIMENTA, A. S. Utilização de carvão e subprodutos da carbonização vegetal na agricultura: aprendendo com as Terras Pretas de Índio. In: TEIXEIRA, W. G.; KERN, D. C.; MADARI, B. E.; LIMA, H. N.; WOODS, W. (Ed.). As terras pretas de índio da Amazônia : sua caracterização e uso deste conhecimento na criação de novas áreas. Manaus: Embrapa Amazônia Ocidental, 2009. p. 285-296.| Biblioteca(s): Embrapa Amazônia Ocidental; Embrapa Solos. |
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| 15. | | BENITES, V. de M.; NOVOTNY, E. H.; TEIXEIRA, W. G.; MADARI, B. E.; PIMENTA, A. S.; TROMPOWSKY, P. M. Use of charcoal and wood carbonization by-products in agriculture: learning with "terra preta de indio". In: INTERNATIONAL AGRICHAR INITIATIVE (IAI) 2007 CONFERENCE, 2007, Terrigal, Australia. [Abstracts]. Terrigal: IAI, 2007. p. 30-31.| Biblioteca(s): Embrapa Arroz e Feijão; Embrapa Solos. |
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| 16. | | BENITES, V. de M.; NOVOTNY, E. H.; TEIXEIRA, W. G.; MADARI, B. E.; PIMENTA, A. S.; TROMPOWSKY, P. M. Use of charcoal and wood carbonization by-products in agriculture: learning with "terra preta de indio". In: INTERNATIONAL AGRICHAR INITIATIVE (IAI) 2007 CONFERENCE, 2007, Terrigal, Australia. [Abstracts]. Terrigal: IAI, 2007. p. 30-31.| Biblioteca(s): Embrapa Amazônia Ocidental. |
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| 18. | | TROMPOWSKY, P. M.; BENITES, V. de M.; MADARI, B. E.; PIMENTA, A. S.; HOCKADAY, W. C.; HATCHER, P. G. Characterization of humic like substances obtained by chemical oxidation of eucalyptus charcoal. Organic Geochemistry, v. 36, n. 11, p. 1480-1489, Nov. 2005.| Biblioteca(s): Embrapa Solos. |
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| Registros recuperados : 35 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Pecuária Sudeste. |
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Data corrente: |
03/05/2021 |
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Data da última atualização: |
12/08/2021 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
BRUSCADIN, J. J.; SOUZA, M. M. DE; OLIVEIRA, K. S. DE; ROCHA, M. I. P.; AFONSO, J.; CARDOSO, T. F.; ZERLOTINI NETO, A.; COUTINHO, L. L.; NICIURA, S. C. M.; REGITANO, L. C. de A. |
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Afiliação: |
JENNIFER JESSICA BRUSCADIN, UFSCAR; MARCELA MARIA DE SOUZA, Iowa State University; KARINA SANTOS DE OLIVEIRA, UFSCAR; MARINA IBELLI PEREIRA ROCHA, UFSCAR; JULIANA AFONSO, USP ESALQ; TAINÃ FIGUEIREDO CARDOSO, FAPESP; ADHEMAR ZERLOTINI NETO, CNPTIA; LUIZ LEHMANN COUTINHO, USP ESALQ; SIMONE CRISTINA MEO NICIURA, CPPSE; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE. |
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Título: |
Muscle allele-specifc expression QTLs may afect meat quality traits in Bos indicus. |
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Ano de publicação: |
2021 |
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Fonte/Imprenta: |
Scientific Reports, v.11, p.1-14, 2021. |
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DOI: |
https://doi.org/10.1038/s41598-021-86782-2 |
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Idioma: |
Inglês |
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Notas: |
Article number: 7321. |
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Conteúdo: |
Single nucleotide polymorphisms (SNPs) located in transcript sequences showing allele-specifc expression (ASE SNPs) were previously identifed in the Longissimus thoracis muscle of a Nelore (Bos indicus) population consisting of 190 steers. Given that the allele-specifc expression pattern may result from cis-regulatory SNPs, called allele-specifc expression quantitative trait loci (aseQTLs), in this study, we searched for aseQTLs in a window of 1 Mb upstream and downstream from each ASE SNP. After this initial analysis, aiming to investigate variants with a potential regulatory role, we further screened our aseQTL data for sequence similarity with transcription factor binding sites and microRNA (miRNA) binding sites. These aseQTLs were overlapped with methylation data from reduced representation bisulfte sequencing (RRBS) obtained from 12 animals of the same population. We identifed 1134 aseQTLs associated with 126 diferent ASE SNPs. For 215 aseQTLs, one allele potentially afected the afnity of a muscle-expressed transcription factor to its binding site. 162 aseQTLs were predicted to afect 149 miRNA binding sites, from which 114 miRNAs were expressed in muscle. Also, 16 aseQTLs were methylated in our population. Integration of aseQTL with GWAS data revealed enrichment for traits such as meat tenderness, ribeye area, and intramuscular fat . To our knowledge, this is the frst report of aseQTLs identifcation in bovine muscle. Our fndings indicate that various cis-regulatory and epigenetic mechanisms can afect multiple variants to modulate the allelic expression. Some of the potential regulatory variants described here were associated with the expression pattern of genes related to interesting phenotypes for livestock. Thus, these variants might be useful for the comprehension of the genetic control of these phenotypes. MenosSingle nucleotide polymorphisms (SNPs) located in transcript sequences showing allele-specifc expression (ASE SNPs) were previously identifed in the Longissimus thoracis muscle of a Nelore (Bos indicus) population consisting of 190 steers. Given that the allele-specifc expression pattern may result from cis-regulatory SNPs, called allele-specifc expression quantitative trait loci (aseQTLs), in this study, we searched for aseQTLs in a window of 1 Mb upstream and downstream from each ASE SNP. After this initial analysis, aiming to investigate variants with a potential regulatory role, we further screened our aseQTL data for sequence similarity with transcription factor binding sites and microRNA (miRNA) binding sites. These aseQTLs were overlapped with methylation data from reduced representation bisulfte sequencing (RRBS) obtained from 12 animals of the same population. We identifed 1134 aseQTLs associated with 126 diferent ASE SNPs. For 215 aseQTLs, one allele potentially afected the afnity of a muscle-expressed transcription factor to its binding site. 162 aseQTLs were predicted to afect 149 miRNA binding sites, from which 114 miRNAs were expressed in muscle. Also, 16 aseQTLs were methylated in our population. Integration of aseQTL with GWAS data revealed enrichment for traits such as meat tenderness, ribeye area, and intramuscular fat . To our knowledge, this is the frst report of aseQTLs identifcation in bovine muscle. Our fndings indicate that various cis-regulatory and ... Mostrar Tudo |
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Palavras-Chave: |
Animal biotechnology; Functional genomics; Gene regulation. |
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Thesaurus NAL: |
Animal breeding; Gene expression; Genetic markers; Genetics; Genome; Genomics; Genotype. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/225126/1/Muscle-Allele-Specifc.pdf
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Marc: |
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100 1 $aBRUSCADIN, J. J.
245 $aMuscle allele-specifc expression QTLs may afect meat quality traits in Bos indicus.$h[electronic resource]
260 $c2021
500 $aArticle number: 7321.
520 $aSingle nucleotide polymorphisms (SNPs) located in transcript sequences showing allele-specifc expression (ASE SNPs) were previously identifed in the Longissimus thoracis muscle of a Nelore (Bos indicus) population consisting of 190 steers. Given that the allele-specifc expression pattern may result from cis-regulatory SNPs, called allele-specifc expression quantitative trait loci (aseQTLs), in this study, we searched for aseQTLs in a window of 1 Mb upstream and downstream from each ASE SNP. After this initial analysis, aiming to investigate variants with a potential regulatory role, we further screened our aseQTL data for sequence similarity with transcription factor binding sites and microRNA (miRNA) binding sites. These aseQTLs were overlapped with methylation data from reduced representation bisulfte sequencing (RRBS) obtained from 12 animals of the same population. We identifed 1134 aseQTLs associated with 126 diferent ASE SNPs. For 215 aseQTLs, one allele potentially afected the afnity of a muscle-expressed transcription factor to its binding site. 162 aseQTLs were predicted to afect 149 miRNA binding sites, from which 114 miRNAs were expressed in muscle. Also, 16 aseQTLs were methylated in our population. Integration of aseQTL with GWAS data revealed enrichment for traits such as meat tenderness, ribeye area, and intramuscular fat . To our knowledge, this is the frst report of aseQTLs identifcation in bovine muscle. Our fndings indicate that various cis-regulatory and epigenetic mechanisms can afect multiple variants to modulate the allelic expression. Some of the potential regulatory variants described here were associated with the expression pattern of genes related to interesting phenotypes for livestock. Thus, these variants might be useful for the comprehension of the genetic control of these phenotypes.
650 $aAnimal breeding
650 $aGene expression
650 $aGenetic markers
650 $aGenetics
650 $aGenome
650 $aGenomics
650 $aGenotype
653 $aAnimal biotechnology
653 $aFunctional genomics
653 $aGene regulation
700 1 $aSOUZA, M. M. DE
700 1 $aOLIVEIRA, K. S. DE
700 1 $aROCHA, M. I. P.
700 1 $aAFONSO, J.
700 1 $aCARDOSO, T. F.
700 1 $aZERLOTINI NETO, A.
700 1 $aCOUTINHO, L. L.
700 1 $aNICIURA, S. C. M.
700 1 $aREGITANO, L. C. de A.
773 $tScientific Reports$gv.11, p.1-14, 2021.
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Embrapa Pecuária Sudeste (CPPSE) |
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